Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015857946.1_cds_XP_016513624.1_26149
CDS Infomation

[gene=LOC107830540] [db_xref=GeneID:107830540] [protein=ubiquitin carboxyl-terminal hydrolase 12-like isoform X2] [protein_id=XP_016513624.1] [location=join(110977..111006,112249..112333,112474..112621,112714..112871,115144..115409,115515..115733,115805..115913,115993..116108,117041..117139,118045..118154,119308..119382,119677..119980,120076..120156,120234..120353,120822..120944,122846..122923,123023..123111,123251..123359,123446..123514,123606..123716,124004..124059,124144..124321,124474..124575,124657..124734)] [gbkey=CDS]
Sequence

ATGACCATGCTGAATCCTCAACCGTTGGATCAGGAAGAAGAGGAGATGCTTGTGCCACAT
TCTGACTTAGTTGAAGGTCCTCAGCCCTTAGTTGAAGGGCCTCAGCCCATGGAAGTGGCA
CCTGCTGAGAATGCTAGTACGGGGGAGAGCCAAGCCGCGGACGAGCCACAGGCATCCCGG
TTTACTTGGACAATTGACAATTTCTCTCGGTTATCTGTGAAGAAGCTATATTCTGAGGCT
TTTGTTGTTGGTAGTTATAAATGGCGAGTGCTTATATTTCCAAAAGGAAACAACGTGGAT
TGTTTGTCAATGTATTTAGATGTGGCAGATTCATCTACATTGCCATATGGGTGGAACAGA
TATGCCCAGTTCAGCTTAGCTGTTGTAAATCAAATAAACCCCAAATATTCAGTGAAAAAA
GAGACGCAGCACCAGTTTAACCAAAGAGAGAGTGACTGGGGCTTCACATCTTTCATGCTT
CTAAGTGATCTTTATGACCCCAATAAGGGATATCTTGTAAATGATAAAGTTGTTATTGAA
GCCGATGTTGCTGTACGAAAGGTCATTGATTACTGGACATATGACTCAAAGAAGGAGACA
GGATATGTTGGGCTTAAGAATCAGGGAGCTACTTGTTACATGAACTCTCTCCTACAAACC
TTGTACCATATCCCCTACTTTAGAAAGGCTGTGTATCACATGCCAACTACAGAGAATGAC
ATGCCATCGGGGAGCATCCCGCTGGCTCTGCAAAGTTTATTTTATAAGCTCCAATATAGT
GATACCAGTGTGGCGACGAAAGAATTGACAAAATCTTTTGGATGGGACACTTATGATTCA
TTCATGCAGCATGATGTGCAAGAATTAAACAGAGTGTTGTGTGAAAAGCTTGAAGACAAG
ATGAAGGGTACCGTTGTGGAAGGGACAATTCAAAAGTTATTTGAGGGGCACCATATGAAT
TACATAGAATGTATCAACGTGGACTTCAAATCAACGAGAAAAGAGTCATTTTATGATCTT
CAACTCGACGTCAAAGGCTGTCGCGATGTTTATGCCTCTTTTGACAAATATGTTGAAGTT
GAACGTCTAGAAGGCGATAATAAGTACCATGCTGAAGAACATGGTTTGCAGGATGCAAAA
AAAGGTGTACTATTTATTGACTTCCCTCCAGTTCTCCAGCTTCAGTTAAAAAGATTTGAA
TATGATTTCATGCGAGATACAATGGTTAAGATAAATGACCGTTATGAATTTCCTCTAGAA
CTTGACCTTGATAGGGAGAATGGCAAATATTTGTCTCCTGATGCAGATAGGAGCGTCCGG
AATCTCTACACACTTCATAGTGTGTTGGTTCATAGTGGTGGTGTGCACGGTGGACACTAT
TATGCTTTCATCAGGCCAACACTATCAGATCAATGGTATAAGTTTGATGATGAACGGGTG
ACAAAAGAAGACTTGAAGAGGGCTCTAGAGGAACAATATGGTGGAGAGGAGGAGGTATAT
GTCGCTAATAGCAGATCTAAATTGTGTCTTGTTGTGACATGCTTTGATTTGGACTTACTT
TTGCTTTTACAGTTGCCACAGACAAATCCTGGCTTCAATAACACCCCCTTTAAGTTTACA
AAATACTCCAACGCGTACATGCTTGTTTATATACGTGAGAGTGACAAGGATAAAATAATT
TGTGATGTCGGTGAGAAAGACATTGCGGAACACCTAAGGATAAGGTTGAAGAAAGAACAA
GAAGAGAAGGAGGACAAGAGAAGATACAAAGCGCAGGCCCACCTTTATACAATTATCAAG
GTTGCACGTGATGAGGATCTTAGGGAGCAGATAGGAAAGGAGATATATTTTGATCTTGTT
GATCATGACAAAGTTCGTAGCTTTCGAATTCAGAAACAGATGCCTTTTAACCTTTTCAAG
GAGGAAGTTGCAAAAGAATTGGGTATCCCAGTTCAGTTCCAGCGTTTCTGGATTTGGGCA
AAGCGGCAAAATCACACTTATCGGCCCAATCGCCCATTAACTCCGCAGGAGGAACTACAA
ACCGTTGGTCAGTTAAGGGAAGTTTCTAACAAGACCAACAATGCCGAGTTAAAATTATTT
TTGGAAGTGGACCTTGGCCTGGATCTCGTTCCTAGTCCTCCACCTGACAAAAGTAAAGAT
GATATACTCCTTTTCTTTAAGCTTTATGATCCTGAGAAAGAAGAGCTTCAATATGTTGGT
AGGCTTTTTGTGAAGAGTACTAGTAAGCCAATTGAAATACTTCCAAAACTGAATGAATTG
GCTGGATTTGCTCCTGACCAAGAAATTGACCTTTTTGAGGAAATAAAATTTGAACCTTCT
GTCATGTGTGAAAGACTAGACAAAAAGGCTTCATTTCGATTTAGCCAGATTGAAGATGGT
GACATTATATGCTTTCAAAAGAAAGCTTCTCCTGAAGTTGAAGAACAAGTCCGATTTCCG
GATGTTCCTTCATATCTGGAATATGTAAAAAATCGCCAGATTGTCCACTTTCGAGCACTG
GAGAAACCAAAGGAGGATGATTTCTGTCTGGAGTTAGCAAAAAGTGATACATATGATGAT
GTAGTGGAGAGAGTGGCGCAGCGGCTTGGTGTGGATGATCCCTCCAAAATTAGGCTTACT
CCACACAACTGCTACTCTCAGCAACCCAAGCCTAACCCCATCAAATATCGGTCCGTGGAT
CATTTGGTAGACATGCTAATCCATTACAATCAGATTTCTGATATTCTTTATTACGAAGTT
CTGGACATTCCTCTGCCAGAATTACAATGTCTGAAGACGCTCAAAGTTGCTTTTCATCAT
TCTACGAAGGATGAGGTTGAAATTTTGAATGTAAGATTGCCTAAGCAGAGTACCGTGGGG
GATGTTCTTAATGAAATCAAATCAAAGGTATAG

Peptide Sequence

PEP ID

XP_016513624.1
PEP Infomation

PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nicotiana tabacum]
Sequence

MTMLNPQPLDQEEEEMLVPHSDLVEGPQPLVEGPQPMEVAPAENASTGESQAADEPQASR
FTWTIDNFSRLSVKKLYSEAFVVGSYKWRVLIFPKGNNVDCLSMYLDVADSSTLPYGWNR
YAQFSLAVVNQINPKYSVKKETQHQFNQRESDWGFTSFMLLSDLYDPNKGYLVNDKVVIE
ADVAVRKVIDYWTYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTEND
MPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDK
MKGTVVEGTIQKLFEGHHMNYIECINVDFKSTRKESFYDLQLDVKGCRDVYASFDKYVEV
ERLEGDNKYHAEEHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLE
LDLDRENGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWYKFDDERV
TKEDLKRALEEQYGGEEEVYVANSRSKLCLVVTCFDLDLLLLLQLPQTNPGFNNTPFKFT
KYSNAYMLVYIRESDKDKIICDVGEKDIAEHLRIRLKKEQEEKEDKRRYKAQAHLYTIIK
VARDEDLREQIGKEIYFDLVDHDKVRSFRIQKQMPFNLFKEEVAKELGIPVQFQRFWIWA
KRQNHTYRPNRPLTPQEELQTVGQLREVSNKTNNAELKLFLEVDLGLDLVPSPPPDKSKD
DILLFFKLYDPEKEELQYVGRLFVKSTSKPIEILPKLNELAGFAPDQEIDLFEEIKFEPS
VMCERLDKKASFRFSQIEDGDIICFQKKASPEVEEQVRFPDVPSYLEYVKNRQIVHFRAL
EKPKEDDFCLELAKSDTYDDVVERVAQRLGVDDPSKIRLTPHNCYSQQPKPNPIKYRSVD
HLVDMLIHYNQISDILYYEVLDIPLPELQCLKTLKVAFHHSTKDEVEILNVRLPKQSTVG
DVLNEIKSKV

Transcript Sequence

Gene sequence data has not been registered.